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C
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D
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H
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X
A
add_sentence() (pytrial.data.vocab_data.Vocab method)
add_trials() (pytrial.tasks.trial_outcome.spot.SPOT method)
atc2name() (pytrial.model_utils.drug.DrugTransformer method)
atc2ndc() (pytrial.model_utils.drug.DrugTransformer method)
atc2smiles() (pytrial.model_utils.drug.DrugTransformer method)
B
BERT (class in pytrial.model_utils.bert)
C
code2desc() (pytrial.model_utils.icd.ICD9_DX_VOC method)
(pytrial.model_utils.icd.ICD9_SG_VOC method)
COMPOSE (class in pytrial.tasks.trial_patient_match.models.compose)
CopulaGAN (class in pytrial.tasks.trial_simulation.tabular.copula_gan)
CTGAN (class in pytrial.tasks.trial_simulation.tabular.ct_gan)
D
DeepEnroll (class in pytrial.tasks.trial_patient_match.models.deepenroll)
Dipole (class in pytrial.tasks.indiv_outcome.sequence.dipole)
Doc2Vec (class in pytrial.tasks.trial_search.models.doc2vec)
DrugGraph (class in pytrial.model_utils.drug)
DrugTransformer (class in pytrial.model_utils.drug)
E
encode() (pytrial.model_utils.bert.BERT method)
(pytrial.tasks.trial_search.models.base.TrialSearchBase method)
(pytrial.tasks.trial_search.models.doc2vec.Doc2Vec method)
(pytrial.tasks.trial_search.models.trial2vec.Trial2Vec method)
(pytrial.tasks.trial_search.models.whiten_bert.WhitenBERT method)
EVA (class in pytrial.tasks.trial_simulation.sequence.eva)
eval() (pytrial.tasks.indiv_outcome.sequence.base.SequenceIndivBase method)
(pytrial.tasks.indiv_outcome.tabular.base.TabularIndivBase method)
(pytrial.tasks.site_selection.base.SiteSelectionBase method)
(pytrial.tasks.trial_patient_match.models.base.PatientTrialMatchBase method)
evaluate() (pytrial.tasks.trial_search.models.trial2vec.Trial2Vec method)
(pytrial.tasks.trial_search.models.whiten_bert.WhitenBERT method)
(pytrial.utils.trainer.Trainer method)
evaluated (pytrial.utils.trainer.Trainer attribute)
F
fit() (pytrial.tasks.indiv_outcome.sequence.base.SequenceIndivBase method)
(pytrial.tasks.indiv_outcome.sequence.dipole.Dipole method)
(pytrial.tasks.indiv_outcome.sequence.raim.RAIM method)
(pytrial.tasks.indiv_outcome.sequence.retain.RETAIN method)
(pytrial.tasks.indiv_outcome.sequence.rnn.RNN method)
(pytrial.tasks.indiv_outcome.sequence.stagenet.StageNet method)
(pytrial.tasks.indiv_outcome.tabular.base.TabularIndivBase method)
(pytrial.tasks.indiv_outcome.tabular.ft_transformer.FTTransformer method)
(pytrial.tasks.indiv_outcome.tabular.logistic_regression.LogisticRegression method)
(pytrial.tasks.indiv_outcome.tabular.mlp.MLP method)
(pytrial.tasks.indiv_outcome.tabular.transtab.TransTab method)
(pytrial.tasks.indiv_outcome.tabular.xgboost.XGBoost method)
(pytrial.tasks.site_selection.base.SiteSelectionBase method)
(pytrial.tasks.site_selection.pgentropy.PolicyGradientEntropy method)
(pytrial.tasks.trial_outcome.hint.HINT method)
(pytrial.tasks.trial_outcome.logistic_regression.LogisticRegression method)
(pytrial.tasks.trial_outcome.mlp.MLP method)
(pytrial.tasks.trial_outcome.spot.SPOT method)
(pytrial.tasks.trial_outcome.xgboost.XGBoost method)
(pytrial.tasks.trial_patient_match.models.base.PatientTrialMatchBase method)
(pytrial.tasks.trial_patient_match.models.compose.COMPOSE method)
(pytrial.tasks.trial_patient_match.models.deepenroll.DeepEnroll method)
(pytrial.tasks.trial_search.models.base.TrialSearchBase method)
(pytrial.tasks.trial_search.models.doc2vec.Doc2Vec method)
(pytrial.tasks.trial_search.models.trial2vec.Trial2Vec method)
(pytrial.tasks.trial_search.models.whiten_bert.WhitenBERT method)
(pytrial.tasks.trial_simulation.sequence.eva.EVA method)
(pytrial.tasks.trial_simulation.sequence.rnn_gan.RNNGAN method)
(pytrial.tasks.trial_simulation.sequence.synteg.SynTEG method)
(pytrial.tasks.trial_simulation.tabular.base.TabularSimulationBase method)
(pytrial.tasks.trial_simulation.tabular.copula_gan.CopulaGAN method)
(pytrial.tasks.trial_simulation.tabular.ct_gan.CTGAN method)
(pytrial.tasks.trial_simulation.tabular.gaussian_copula.GaussianCopula method)
(pytrial.tasks.trial_simulation.tabular.med_gan.MedGAN method)
(pytrial.tasks.trial_simulation.tabular.tvae.TVAE method)
forward() (pytrial.model_utils.bert.BERT method)
from_pretrained() (pytrial.tasks.trial_search.models.trial2vec.Trial2Vec method)
FTTransformer (class in pytrial.tasks.indiv_outcome.tabular.ft_transformer)
G
GaussianCopula (class in pytrial.tasks.trial_simulation.tabular.gaussian_copula)
get_condition_synonym_from_nih() (in module pytrial.model_utils.icd)
get_ec_sentence_embedding() (pytrial.data.trial_data.TrialDatasetBase method)
get_icd10_from_nih() (in module pytrial.model_utils.icd)
get_icd9dx_from_nih() (in module pytrial.model_utils.icd)
get_icd9sg_from_nih() (in module pytrial.model_utils.icd)
get_test_dataloader() (pytrial.utils.trainer.Trainer method)
H
HINT (class in pytrial.tasks.trial_outcome.hint)
I
ICD10Graph (class in pytrial.model_utils.icd)
ICD9_DX_VOC (class in pytrial.model_utils.icd)
ICD9_SG_VOC (class in pytrial.model_utils.icd)
ICD9Graph (class in pytrial.model_utils.icd)
L
load_mimic_ehr_sequence() (in module pytrial.data.demo_data)
load_model() (pytrial.tasks.indiv_outcome.sequence.base.SequenceIndivBase method)
(pytrial.tasks.indiv_outcome.sequence.dipole.Dipole method)
(pytrial.tasks.indiv_outcome.sequence.raim.RAIM method)
(pytrial.tasks.indiv_outcome.sequence.retain.RETAIN method)
(pytrial.tasks.indiv_outcome.sequence.rnn.RNN method)
(pytrial.tasks.indiv_outcome.sequence.stagenet.StageNet method)
(pytrial.tasks.indiv_outcome.tabular.base.TabularIndivBase method)
(pytrial.tasks.indiv_outcome.tabular.ft_transformer.FTTransformer method)
(pytrial.tasks.indiv_outcome.tabular.logistic_regression.LogisticRegression method)
(pytrial.tasks.indiv_outcome.tabular.mlp.MLP method)
(pytrial.tasks.indiv_outcome.tabular.transtab.TransTab method)
(pytrial.tasks.indiv_outcome.tabular.xgboost.XGBoost method)
(pytrial.tasks.site_selection.base.SiteSelectionBase method)
(pytrial.tasks.site_selection.pgentropy.PolicyGradientEntropy method)
(pytrial.tasks.trial_outcome.hint.HINT method)
(pytrial.tasks.trial_outcome.logistic_regression.LogisticRegression method)
(pytrial.tasks.trial_outcome.mlp.MLP method)
(pytrial.tasks.trial_outcome.spot.SPOT method)
(pytrial.tasks.trial_outcome.xgboost.XGBoost method)
(pytrial.tasks.trial_patient_match.models.base.PatientTrialMatchBase method)
(pytrial.tasks.trial_patient_match.models.compose.COMPOSE method)
(pytrial.tasks.trial_patient_match.models.deepenroll.DeepEnroll method)
(pytrial.tasks.trial_search.models.base.TrialSearchBase method)
(pytrial.tasks.trial_search.models.doc2vec.Doc2Vec method)
(pytrial.tasks.trial_search.models.trial2vec.Trial2Vec method)
(pytrial.tasks.trial_search.models.whiten_bert.WhitenBERT method)
(pytrial.tasks.trial_simulation.sequence.eva.EVA method)
(pytrial.tasks.trial_simulation.sequence.rnn_gan.RNNGAN method)
(pytrial.tasks.trial_simulation.sequence.synteg.SynTEG method)
(pytrial.tasks.trial_simulation.tabular.base.TabularSimulationBase method)
(pytrial.tasks.trial_simulation.tabular.copula_gan.CopulaGAN method)
(pytrial.tasks.trial_simulation.tabular.ct_gan.CTGAN method)
(pytrial.tasks.trial_simulation.tabular.gaussian_copula.GaussianCopula method)
(pytrial.tasks.trial_simulation.tabular.med_gan.MedGAN method)
(pytrial.tasks.trial_simulation.tabular.tvae.TVAE method)
load_synthetic_ehr_sequence() (in module pytrial.data.demo_data)
load_trial_document_data() (in module pytrial.data.demo_data)
load_trial_outcome_data() (in module pytrial.data.demo_data)
load_trial_patient_sequence() (in module pytrial.data.demo_data)
load_trial_patient_tabular() (in module pytrial.data.demo_data)
LogisticRegression (class in pytrial.tasks.indiv_outcome.tabular.logistic_regression)
(class in pytrial.tasks.trial_outcome.logistic_regression)
M
MedGAN (class in pytrial.tasks.trial_simulation.tabular.med_gan)
MLP (class in pytrial.tasks.indiv_outcome.tabular.mlp)
(class in pytrial.tasks.trial_outcome.mlp)
N
name2atc() (pytrial.model_utils.drug.DrugTransformer method)
name2ndc() (pytrial.model_utils.drug.DrugTransformer method)
name2smiles() (pytrial.model_utils.drug.DrugTransformer method)
ndc2atc() (pytrial.model_utils.drug.DrugTransformer method)
ndc2name() (pytrial.model_utils.drug.DrugTransformer method)
ndc2smiles() (pytrial.model_utils.drug.DrugTransformer method)
P
PatientTrialMatchBase (class in pytrial.tasks.trial_patient_match.models.base)
PolicyGradientEntropy (class in pytrial.tasks.site_selection.pgentropy)
predict() (pytrial.tasks.indiv_outcome.sequence.base.SequenceIndivBase method)
(pytrial.tasks.indiv_outcome.sequence.dipole.Dipole method)
(pytrial.tasks.indiv_outcome.sequence.raim.RAIM method)
(pytrial.tasks.indiv_outcome.sequence.retain.RETAIN method)
(pytrial.tasks.indiv_outcome.sequence.rnn.RNN method)
(pytrial.tasks.indiv_outcome.sequence.stagenet.StageNet method)
(pytrial.tasks.indiv_outcome.tabular.base.TabularIndivBase method)
(pytrial.tasks.indiv_outcome.tabular.ft_transformer.FTTransformer method)
(pytrial.tasks.indiv_outcome.tabular.logistic_regression.LogisticRegression method)
(pytrial.tasks.indiv_outcome.tabular.mlp.MLP method)
(pytrial.tasks.indiv_outcome.tabular.transtab.TransTab method)
(pytrial.tasks.indiv_outcome.tabular.xgboost.XGBoost method)
(pytrial.tasks.site_selection.base.SiteSelectionBase method)
(pytrial.tasks.site_selection.pgentropy.PolicyGradientEntropy method)
(pytrial.tasks.trial_outcome.hint.HINT method)
(pytrial.tasks.trial_outcome.logistic_regression.LogisticRegression method)
(pytrial.tasks.trial_outcome.mlp.MLP method)
(pytrial.tasks.trial_outcome.spot.SPOT method)
(pytrial.tasks.trial_outcome.xgboost.XGBoost method)
(pytrial.tasks.trial_patient_match.models.base.PatientTrialMatchBase method)
(pytrial.tasks.trial_patient_match.models.compose.COMPOSE method)
(pytrial.tasks.trial_patient_match.models.deepenroll.DeepEnroll method)
(pytrial.tasks.trial_search.models.doc2vec.Doc2Vec method)
(pytrial.tasks.trial_search.models.trial2vec.Trial2Vec method)
(pytrial.tasks.trial_search.models.whiten_bert.WhitenBERT method)
(pytrial.tasks.trial_simulation.sequence.eva.EVA method)
(pytrial.tasks.trial_simulation.sequence.rnn_gan.RNNGAN method)
(pytrial.tasks.trial_simulation.sequence.synteg.SynTEG method)
(pytrial.tasks.trial_simulation.tabular.base.TabularSimulationBase method)
(pytrial.tasks.trial_simulation.tabular.copula_gan.CopulaGAN method)
(pytrial.tasks.trial_simulation.tabular.ct_gan.CTGAN method)
(pytrial.tasks.trial_simulation.tabular.gaussian_copula.GaussianCopula method)
(pytrial.tasks.trial_simulation.tabular.med_gan.MedGAN method)
(pytrial.tasks.trial_simulation.tabular.tvae.TVAE method)
prepare_input() (pytrial.utils.trainer.Trainer method)
preprocess() (pytrial.model_utils.drug.DrugGraph method)
R
RAIM (class in pytrial.tasks.indiv_outcome.sequence.raim)
RETAIN (class in pytrial.tasks.indiv_outcome.sequence.retain)
reverse_transform() (pytrial.data.patient_data.TabularPatientBase method)
RNN (class in pytrial.tasks.indiv_outcome.sequence.rnn)
RNNGAN (class in pytrial.tasks.trial_simulation.sequence.rnn_gan)
S
save_model() (pytrial.tasks.indiv_outcome.sequence.base.SequenceIndivBase method)
(pytrial.tasks.indiv_outcome.sequence.dipole.Dipole method)
(pytrial.tasks.indiv_outcome.sequence.raim.RAIM method)
(pytrial.tasks.indiv_outcome.sequence.retain.RETAIN method)
(pytrial.tasks.indiv_outcome.sequence.rnn.RNN method)
(pytrial.tasks.indiv_outcome.sequence.stagenet.StageNet method)
(pytrial.tasks.indiv_outcome.tabular.base.TabularIndivBase method)
(pytrial.tasks.indiv_outcome.tabular.ft_transformer.FTTransformer method)
(pytrial.tasks.indiv_outcome.tabular.logistic_regression.LogisticRegression method)
(pytrial.tasks.indiv_outcome.tabular.mlp.MLP method)
(pytrial.tasks.indiv_outcome.tabular.transtab.TransTab method)
(pytrial.tasks.indiv_outcome.tabular.xgboost.XGBoost method)
(pytrial.tasks.site_selection.base.SiteSelectionBase method)
(pytrial.tasks.site_selection.pgentropy.PolicyGradientEntropy method)
(pytrial.tasks.trial_outcome.hint.HINT method)
(pytrial.tasks.trial_outcome.logistic_regression.LogisticRegression method)
(pytrial.tasks.trial_outcome.mlp.MLP method)
(pytrial.tasks.trial_outcome.spot.SPOT method)
(pytrial.tasks.trial_outcome.xgboost.XGBoost method)
(pytrial.tasks.trial_patient_match.models.base.PatientTrialMatchBase method)
(pytrial.tasks.trial_patient_match.models.compose.COMPOSE method)
(pytrial.tasks.trial_patient_match.models.deepenroll.DeepEnroll method)
(pytrial.tasks.trial_search.models.base.TrialSearchBase method)
(pytrial.tasks.trial_search.models.doc2vec.Doc2Vec method)
(pytrial.tasks.trial_search.models.trial2vec.Trial2Vec method)
(pytrial.tasks.trial_search.models.whiten_bert.WhitenBERT method)
(pytrial.tasks.trial_simulation.sequence.eva.EVA method)
(pytrial.tasks.trial_simulation.sequence.rnn_gan.RNNGAN method)
(pytrial.tasks.trial_simulation.sequence.synteg.SynTEG method)
(pytrial.tasks.trial_simulation.tabular.base.TabularSimulationBase method)
(pytrial.tasks.trial_simulation.tabular.copula_gan.CopulaGAN method)
(pytrial.tasks.trial_simulation.tabular.ct_gan.CTGAN method)
(pytrial.tasks.trial_simulation.tabular.gaussian_copula.GaussianCopula method)
(pytrial.tasks.trial_simulation.tabular.med_gan.MedGAN method)
(pytrial.tasks.trial_simulation.tabular.tvae.TVAE method)
SeqPatientCollator (class in pytrial.data.patient_data)
SequenceIndivBase (class in pytrial.tasks.indiv_outcome.sequence.base)
SequencePatientBase (class in pytrial.data.patient_data)
SiteSelectionBase (class in pytrial.tasks.site_selection.base)
SPOT (class in pytrial.tasks.trial_outcome.spot)
StageNet (class in pytrial.tasks.indiv_outcome.sequence.stagenet)
SynTEG (class in pytrial.tasks.trial_simulation.sequence.synteg)
T
TabularIndivBase (class in pytrial.tasks.indiv_outcome.tabular.base)
TabularPatientBase (class in pytrial.data.patient_data)
TabularSimulationBase (class in pytrial.tasks.trial_simulation.tabular.base)
train() (pytrial.tasks.indiv_outcome.sequence.base.SequenceIndivBase method)
(pytrial.tasks.indiv_outcome.tabular.base.TabularIndivBase method)
(pytrial.tasks.site_selection.base.SiteSelectionBase method)
(pytrial.tasks.trial_patient_match.models.base.PatientTrialMatchBase method)
(pytrial.utils.trainer.Trainer method)
train_one_iteration() (pytrial.utils.trainer.Trainer method)
Trainer (class in pytrial.utils.trainer)
transform() (pytrial.data.patient_data.TabularPatientBase method)
transform_topic() (pytrial.tasks.trial_outcome.spot.SPOT method)
TransTab (class in pytrial.tasks.indiv_outcome.tabular.transtab)
Trial2Vec (class in pytrial.tasks.trial_search.models.trial2vec)
TrialDatasetBase (class in pytrial.data.trial_data)
TrialOutcomeDatasetBase (class in pytrial.data.trial_data)
TrialSearchBase (class in pytrial.tasks.trial_search.models.base)
TVAE (class in pytrial.tasks.trial_simulation.tabular.tvae)
U
update() (pytrial.tasks.indiv_outcome.tabular.transtab.TransTab method)
update_emb() (pytrial.tasks.trial_search.models.trial2vec.Trial2Vec method)
V
Vocab (class in pytrial.data.vocab_data)
vocab (pytrial.data.vocab_data.Vocab property)
W
WhitenBERT (class in pytrial.tasks.trial_search.models.whiten_bert)
words (pytrial.data.vocab_data.Vocab property)
X
XGBoost (class in pytrial.tasks.indiv_outcome.tabular.xgboost)
(class in pytrial.tasks.trial_outcome.xgboost)
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